BITS Meetings' Virtual Library:
Abstracts from Italian Bioinformatics Meetings from 1999 to 2013


766 abstracts overall from 11 distinct proceedings





Display Abstracts | Brief :: Order by Meeting | First Author Name
1. Brick K, Pizzi E
Construction and analysis of compositionally biased substitution matrices for alignment of Plasmodium spp. proteins
Meeting: BITS 2007 - Year: 2007
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Topic: Structural and functional analysis of genomes
2. Castrignanò T, D'Antonio M, D'Onorio De Meo P, Sanna N, Rizzi R, Mignone F, Bonizzoni P, Pesole G
HPC for Aspic: a distributed web resource for alternative splicing prediction and transcript isoform characterization
Meeting: BITS 2007 - Year: 2007
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Topic: Structural and functional analysis of genomes
3. Chiusano ML, D'Agostino N, Traini A, Licciardello C, Raimondo E, Aversano M, Frusciante L
An integrated computational workbench for structural and functional analysis in the solanaceae genomics network
Meeting: BITS 2007 - Year: 2007
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Topic: Structural and functional analysis of genomes
4. Corà D, Di Cunto F, Caselle M, Provero P
Identification of candidate regulatory sequences in mammalian 3'-UTR regions by statistical analysis of oligonucleotide distributions
Meeting: BITS 2007 - Year: 2007
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Topic: Structural and functional analysis of genomes
5. Cozzuto L, Petrillo M, Silvestro G, Di Nocera PP, Paolella G
Evaluation of the potential for secondary structure formation in repeated bacterial sequences: identification of 58 families sharing common motifs.
Meeting: BITS 2007 - Year: 2007
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Topic: Structural and functional analysis of genomes
6. Ferro A, Forte S, Giugno R, Laganà A, Pulvirenti A, Barbagallo D, Di Pietro C, Majorana A, Purrello M, Ragusa M, Bonci D, De Maria R, Pagliuca A
Prediction of human targets for viral encoded microRNAs by thermodynamics and empirical constraints
Meeting: BITS 2007 - Year: 2007
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Topic: Structural and functional analysis of genomes
7. Abbondante S, Nitsch R, Di Dato V, Di Gennaro A, Di Lauro R, Zannini S
A conserved thyroid-specific enhancer in the human and mouse Pax8 locus.
Meeting: BITS 2007 - Year: 2007
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Topic: Structural and functional analysis of genomes
8. Bordo D, Demartini P, Polacco M
Identification of conserved sites in protein folds
Meeting: BITS 2007 - Year: 2007
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Topic: Structural and functional analysis of genomes
9. Brilli M, Fani R, Liò P
Correlation between structural properties of promoters and physico-chemical features of Transcription Factors
Meeting: BITS 2007 - Year: 2007
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Topic: Structural and functional analysis of genomes
10. D'Agostino N, Chiusano ML
Characterizing the tomato transcriptome
Meeting: BITS 2007 - Year: 2007
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Topic: Structural and functional analysis of genomes
11. D'Elia D, Germinario L, Grillo G
Analysis of UTRs from nuclear-encoded mitochondrial mRNA in Metazoa reveals new insights about molecular mechanisms controlling mitochondrial biogenesis
Meeting: BITS 2007 - Year: 2007
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Topic: Structural and functional analysis of genomes
12. Gennarino V, Avellino R, Maselli V, Roma G, Peluso I, Stupka E, Banfi S
Ultra Conserved Elements: twofold functions ?
Meeting: BITS 2007 - Year: 2007
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Topic: Structural and functional analysis of genomes
13. Molineris I, Sales G, Peyron C, Di Cunto F, Bianchi F, Caselle M
Prediction of new genes and transcriptome survey through an 'ab-initio'
Meeting: BITS 2007 - Year: 2007
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Topic: Structural and functional analysis of genomes
14. Ausiello G, Gatti E, Gherardini PF, Via A, Helmer-Citterich M
An exhaustive analysis of analogies in protein binding sites of known structure
Meeting: BITS 2007 - Year: 2007
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Topic: Structural biology and drug design
15. Capriotti E, Fariselli P, Rossi I, Casadio R
The effect of mutations on protein stability changes: a three class pair residue-discrimination study
Meeting: BITS 2007 - Year: 2007
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Topic: Structural biology and drug design
16. Costantini S, Facchiano AM, Colonna G
Globularity criteria to evaluate the structural quality of modeled proteins
Meeting: BITS 2007 - Year: 2007
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Topic: Structural biology and drug design
17. Eberini I, Emerson A, Gambari R, Rossi E, Giuliani S, Piccagli L
Molecular Dynamics Simulation of the NF-kB Transcription Factor
Meeting: BITS 2007 - Year: 2007
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Topic: Structural biology and drug design
18. Marangoni R, Barison V, Cossi M, Gottardi R, Raiteri R
Protein imaging via AFM: a feasibility study.
Meeting: BITS 2007 - Year: 2007
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Topic: Structural biology and drug design
19. Marcatili P, Tramontano A
MoVIN server: Motif Validation of Interaction Networks
Meeting: BITS 2007 - Year: 2007
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Topic: Structural biology and drug design
20. Marsico A, Sapra KT, Labudde D, Schroeder M
A computational analysis of Bacteriorhodopsin and four mutants reveals local conformational changes correlating to changing probabilities in unfolding pathways
Meeting: BITS 2007 - Year: 2007
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Topic: Structural biology and drug design
21. Mucherino A, Di Serafino D, D'Apuzzo M, Costantini S, Facchiano AM, Colonna G
A geometrical model for generating mainly-alpha protein conformations
Meeting: BITS 2007 - Year: 2007
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Topic: Structural biology and drug design
22. Oliva R, Cavallo L, Tramontano A
Bioinformatics and quantum mechanics analysis of tRNA tertiary interactions
Meeting: BITS 2007 - Year: 2007
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Topic: Structural biology and drug design
23. Vitagliano L, Paladino A, Pedone C, Esposito L
Molecular dynamics analyses of peptides forming amyloid-like fibrils
Meeting: BITS 2007 - Year: 2007
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Topic: Structural biology and drug design
24. Ausiello G, Gherardini PF, Via A, Helmer-Citterich M
FunClust: Identification of functional motifs in non homologous proteins using multiple local structure comparison.
Meeting: BITS 2007 - Year: 2007
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Topic: Structural biology and drug design
25. Autore F, Pagano B, Rittinger K, Fraternali F
In silico Phosphorylation of the SuperSH3 domain of p47phox
Meeting: BITS 2007 - Year: 2007
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Topic: Structural biology and drug design
26. Berisio R, Ruggiero A, Pedone C, Vitagliano L
Insight into pilus and non-pilus biogenesis from molecular dynamics studies
Meeting: BITS 2007 - Year: 2007
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Topic: Structural biology and drug design
27. Calvanese L, Falcigno L, Oliva R, D'Auria G, Vacatello M, Paolillo L, Marasco D, Ruvo M
Structural Insights on the oncoprotein Cripto CFC domain and its Alk4 receptor
Meeting: BITS 2007 - Year: 2007
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Topic: Structural biology and drug design
28. Costantini S, Colonna G, Facchiano AM
How could the protein-protein complexes be modelled?
Meeting: BITS 2007 - Year: 2007
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Topic: Structural biology and drug design
29. Cubellis MV, Andreotti G, Degryse B, Motta A, Blasi F, Fernandez-Recio J
Protein docking by a combined approach
Meeting: BITS 2007 - Year: 2007
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Topic: Structural biology and drug design
30. D'Ursi P, Chiappori F, Salvi E, Merelli I, Rovida E, Milanesi L
Grid docking simulations for comparative ligand binding of neuraminidase structures
Meeting: BITS 2007 - Year: 2007
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Topic: Structural biology and drug design
31. Gini G, Folgheraiter M, Caccia C, Salvati P, Dondio G, Forlani R
A GMDH type net for the early screening of candidate drugs: the case of alpha-aminoamides
Meeting: BITS 2007 - Year: 2007
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Topic: Structural biology and drug design
32. Merlino A, Sica F, Mazzarella L
Comparative structural analysis of active site clefts in pancreatic-like ribonucleases
Meeting: BITS 2007 - Year: 2007
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Topic: Structural biology and drug design
33. Oliva R, Morea V, Montanari A, De Luca C, Francisci S, Besagni C, Bolotin-Fukuhara M, Tramontano A, Frontali L
Bioinformatics and experimental characterisation of yeast mitochondrial tRNA mutants responsible of defective phenotypes mirroring human pathologies
Meeting: BITS 2007 - Year: 2007
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Topic: Structural biology and drug design
34. Paladino A, Esposito L, Stanzione F, Pedone C, Morelli G, Vitagliano L
Conformational versatility of N-terminal regions of neurotrophins: a molecular dynamics study
Meeting: BITS 2007 - Year: 2007
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Topic: Structural biology and drug design
35. Rosano C, Marra D, Cesarini S, Ranise A, Spallarossa A
Virtual screening and structure based drug design of new Fes/Fps kinase domain inhibitors.
Meeting: BITS 2007 - Year: 2007
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Topic: Structural biology and drug design
36. Torrens F, Castellano G
An information model for the classification of HIV-1 virus inhibitors
Meeting: BITS 2007 - Year: 2007
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Topic: Structural biology and drug design
37. Varriale S, Merlino A, Coscia MR, Mazzarella L, Oreste U
Molecular dynamics of Immunoglobulin transmembrane helix dimerization
Meeting: BITS 2007 - Year: 2007
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Topic: Structural biology and drug design
38. Via A, Lucca T, Diella F, Ausiello G, Helmer-Citterich M
Analysis of phosphorylation sites in 3D protein structures
Meeting: BITS 2007 - Year: 2007
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Topic: Structural biology and drug design
39. Bansal M, Belcastro V, Ambesi-Impiombato A, Di Bernardo D
Gene network reverse engineering: comparison of algorithms
Meeting: BITS 2007 - Year: 2007
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Topic: Gene expression and system biology
40. Bersani AM, Bersani E, Pedersen MG
Oscillations and bistability in intracellular signal transduction pathways
Meeting: BITS 2007 - Year: 2007
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Topic: Gene expression and system biology
41. Buonaguro L, Aricò E, Wang E, Tornesello M, Tagliamonte M, Lewis GK, Marincola FM, Buonaguro FM
Gene expression profile of Immature monocyte-derived dendritic cells in response to HIV-1 Virus-Like Particles stimulation.
Meeting: BITS 2007 - Year: 2007
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Topic: Gene expression and system biology
42. Cuccato G, Marucci L, Siciliano V, Di Bernardo D
Synthetic 'switches': a new way to tackle complex diseases and biotechnological innovation
Meeting: BITS 2007 - Year: 2007
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Topic: Gene expression and system biology
43. Della Gatta G, Bansal M, Ambesi-Impiombato A, Missero C, Di Bernardo D
Integrated experimental and systems biology approach to the identification of transcriptional regulatory network of p63 transcription factor
Meeting: BITS 2007 - Year: 2007
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Topic: Gene expression and system biology
44. Di Camillo B, Toffolo G, Cobelli C
A transcription network simulator
Meeting: BITS 2007 - Year: 2007
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Topic: Gene expression and system biology
45. Guarracino MR, Feminiano D, Del Vecchio Blanco F, Cuciniello S
Incremental classification models and characterization for gene expression data analysis
Meeting: BITS 2007 - Year: 2007
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Topic: Gene expression and system biology
46. Lauria M, Di Bernardo D
A computationally efficient method for gene network identification
Meeting: BITS 2007 - Year: 2007
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Topic: Gene expression and system biology
47. Muller H, Mancuso FM, Cittaro D, Finocchiaro G
Identification of cancer signaling pathways from published gene expession signatures using PubLiME
Meeting: BITS 2007 - Year: 2007
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Topic: Gene expression and system biology
48. Pereira V, Eyre-walker A
Scale-free Meta-Analysis Of Microarrays And The Relationship Between Gene Expression And DNA Sequence Evolution
Meeting: BITS 2007 - Year: 2007
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Topic: Gene expression and system biology
49. Pesando I
Identification of couples and triples of co-occurring transcription factor binding sites sequences from relative distance and GO filter.
Meeting: BITS 2007 - Year: 2007
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Topic: Gene expression and system biology
50. Riva L, Yeger-lotem E, Karger DR, Pattini L, Casari G, Cerutti S, Fraenkel E
Identification of Perturbed Pathways Using High-throughput Data
Meeting: BITS 2007 - Year: 2007
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Topic: Gene expression and system biology
51. Ala U, Provero P, Piro R, Damasco C, Grassi E, Di Cunto F
Generation and analysis of a human-mouse conserved co-expression network
Meeting: BITS 2007 - Year: 2007
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Topic: Gene expression and system biology
52. Altobelli G, Caselle M, De Bortoli M
Identifying networks of estrogen-responsive genes in breast cancer cells
Meeting: BITS 2007 - Year: 2007
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Topic: Gene expression and system biology
53. Cannata N, Angeletti M, Baldoncini A, Corradini F, Culmone R, Forcato C, Mattioni M, Merelli E
Spatial behavioral modeling and simulation of metabolic pathways with Orion
Meeting: BITS 2007 - Year: 2007
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Topic: Gene expression and system biology
54. Ciolfi A, Sassi M, Sessa G, Salvucci S, Uva P, Becker J, Morelli G, Ruberti I
A global expression analysis of the shade avoidance response in Arabidopsis thaliana
Meeting: BITS 2007 - Year: 2007
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Topic: Gene expression and system biology
55. Crispi S, Di Gestore F, Paola F, Ursini MV, Menegozzo M
Gene expression analysis of mesothelioma samples
Meeting: BITS 2007 - Year: 2007
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Topic: Gene expression and system biology
56. De Simone V, Aiese Cigliano R, Parlati A, Costa A, Romano M, Martinelli R, Grillo S
Short sequence motifs enriched in 5 upstream and UTR regions of A.thaliana genes homologous to potato hyper- or hypo-expressed mrnas upon hydric stress
Meeting: BITS 2007 - Year: 2007
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Topic: Gene expression and system biology
57. De Simone V, Donnarumma I, Gambardella L, Romano M, Pauciullo P, Gentile M, Martinelli R, Rubba P
Short sequence motifs enriched in 5 upstream and UTR regions of human genes hyper- or hypo-expressed upon statin treatment in familial combined hyperlipidemia patients
Meeting: BITS 2007 - Year: 2007
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Topic: Gene expression and system biology
58. Di Camillo B, Toffolo G, Cobelli C
Bayesian inference of transcriptional networks from gene temporal expression patterns
Meeting: BITS 2007 - Year: 2007
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Topic: Gene expression and system biology
59. Dutta A, Blanzieri E
Inferring causal relationships between dynamic genomic phase clusters
Meeting: BITS 2007 - Year: 2007
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Topic: Gene expression and system biology
60. Falciano F, Zangrando A, Bicciato S, Tagliafico E, Ferrari F
Gene marker identification for prognostic prediction of Acute Mieloid Leukemia (AML) from gene expression data.
Meeting: BITS 2007 - Year: 2007
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Topic: Gene expression and system biology
61. Grober Olì MV, Mutarelli M, Cicatiello L, Ravo M, Vigilante A, Facchiano AM, Weisz A
Comparative whole-genome microarray analysis of two estrogen-responsive breast cancer cell lines
Meeting: BITS 2007 - Year: 2007
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Topic: Gene expression and system biology
62. Lazzari B, Caprera A, Vecchietti A, Merelli I, Barale F, Milanesi L, Stella A, Pozzi C
Version VI of the ESTree db: an improved tool for peach transcriptome analysis
Meeting: BITS 2007 - Year: 2007
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Topic: Gene expression and system biology
63. Loguercio S
Critical points in a pathogen bacterial network and their implication for drug discovery.
Meeting: BITS 2007 - Year: 2007
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Topic: Gene expression and system biology
64. Martignetti L, Caselle M, Jacq B, Herrmann C
DrosOCB: a high resolution map of conserved non coding sequences in Drosophila
Meeting: BITS 2007 - Year: 2007
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Topic: Gene expression and system biology
65. Mosca E, Alfieri R, Merelli I, Milanesi L
Development of a systems biology infrastructure for mathematical modelling and parameter estimation
Meeting: BITS 2007 - Year: 2007
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Topic: Gene expression and system biology
66. Mutarelli M, Cicatiello L, Ravo M, Grober Olì MV, Facchiano AM, Angelini C, Weisz A
Time-course whole-genome microarray analysis of estrogen effects on hormone-responsive breast cancer cells
Meeting: BITS 2007 - Year: 2007
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Topic: Gene expression and system biology
67. Mutarelli M, Cicatiello L, Ravo M, Ferraro L, Facchiano AM, Weisz A
Evaluation of a novel microarray-based assay for gene expression profiling on formalin-fixed, paraffin embedded (FFPE) tissue samples
Meeting: BITS 2007 - Year: 2007
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Topic: Gene expression and system biology
68. Orso F, Corà D, Penna E, Cimino D, De Bortoli M, Taverna D, Caselle M
IDENTIFICATION OF NEW AP-2ALPHA REGULATED GENES: A BIOLOGICAL AND BIOINFORMATIC APPROACH
Meeting: BITS 2007 - Year: 2007
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Topic: Gene expression and system biology
69. Persico M, Hoffmann R, Marras E, Capobianco E
Evolutive constraints for wiring and characterizing human subproteomes
Meeting: BITS 2007 - Year: 2007
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Topic: Gene expression and system biology
70. Re A, Caselle M
identification of reliable miRNA targets based on combinatorial miRNA action and integration of different prediction tools
Meeting: BITS 2007 - Year: 2007
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Topic: Gene expression and system biology
71. Ripoli A, Mercatanti A, Rainaldi G
An agent-based model of microRNA-mediated gene regulation: simulation and interpretation of observational data
Meeting: BITS 2007 - Year: 2007
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Topic: Gene expression and system biology
72. Uva P, Sbardellati A, Lahm A, De Rinaldis E
Comparative expression analysis of primary tumors and cell lines reveals distinct patterns of expression of membrane-associated protein genes
Meeting: BITS 2007 - Year: 2007
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Topic: Gene expression and system biology
73. Cantarella C, Sepe L, Paolella G
IPROC, a remote web application for analysis and processing of multidimensional biological images
Meeting: BITS 2007 - Year: 2007
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Topic: Novel methodologies, algorithms and tools
74. Ferraro E, Peluso D, Via A, Ausiello G, Helmer-Citterich M
SH3-Hunter: discovery of SH3 domain interaction sites in proteins.
Meeting: BITS 2007 - Year: 2007
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Topic: Novel methodologies, algorithms and tools
75. Rovetta S, Masulli F, Filippone M
Generating multidimensional embeddings based on fuzzy memberships
Meeting: BITS 2007 - Year: 2007
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Topic: Novel methodologies, algorithms and tools
76. Cannataro M, Guzzi PH, Veltri P
A Framework for the Prediction of Protein Complexes
Meeting: BITS 2007 - Year: 2007
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Topic: Novel methodologies, algorithms and tools
77. Casagrande A, Lain O, Policriti A, Testolin R
LadderFinder: a tool for allelic ladders
Meeting: BITS 2007 - Year: 2007
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Topic: Novel methodologies, algorithms and tools
78. Coppe A, Basso D, Ferrari F, Danieli GA, Bicciato S, Bortoluzzi S
REEF and LAP: a computational framework for the identification of chromosomal regions associated to functional features enrichment and differential expression.
Meeting: BITS 2007 - Year: 2007
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Topic: Novel methodologies, algorithms and tools
79. Dalla E, Braidotti M, Buttol A, Zantoni M, Montanari A, Schneider C
Temporal Analysis of Nucleotide Sequence Annotation
Meeting: BITS 2007 - Year: 2007
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Topic: Novel methodologies, algorithms and tools
80. Del Fabbro C, Cattonaro F, Policriti A, Morgante M
Automatic identification of Transposable Elements
Meeting: BITS 2007 - Year: 2007
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Topic: Novel methodologies, algorithms and tools
81. Furlanello C, Jurman G, Riccadonna S, Barla A, Paoli S, Merler S
Biomarker stability of multiresolution proteomic profiling
Meeting: BITS 2007 - Year: 2007
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Topic: Novel methodologies, algorithms and tools
82. Manavski S, Mariano A, Valle G
CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment
Meeting: BITS 2007 - Year: 2007
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Topic: Novel methodologies, algorithms and tools
83. Marabotti A, Facchiano AM
Critical Assessment of Side Chain Prediction (CASCP): an in-house evaluation on single-point mutants of lysozyme.
Meeting: BITS 2007 - Year: 2007
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Topic: Novel methodologies, algorithms and tools
84. Pandini A, Bonati L, Fraternali F, Kleinjung J
MinSet: automatic derivation of maximally representative subsets of protein structural domains
Meeting: BITS 2007 - Year: 2007
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Topic: Novel methodologies, algorithms and tools
85. Tagliaferri R, Cocozza S, Iorio F, Miele G, Napolitano F, Pinelli M, Raiconi G
A tool for interactive analysis of bioinformatics data
Meeting: BITS 2007 - Year: 2007
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Topic: Novel methodologies, algorithms and tools
86. Urso A, Fiannaca A, Gaglio S, Giammanco GM, La Rosa M, Rizzo R
Use of Soft Topographic Maps for Clustering Bacteria on the basis of their 16S rRNA gene sequence
Meeting: BITS 2007 - Year: 2007
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Topic: Novel methodologies, algorithms and tools
87. Valentini G, Bertoni A
A statistical test based on the Bernstein inequality to discover multi-level structures in bio-molecular data.
Meeting: BITS 2007 - Year: 2007
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Topic: Novel methodologies, algorithms and tools
88. Attimonelli M, Rubino F, Voukelatu A, De Luca F, De Giorgi C
PPNEMA: a database of the RNA cistron from Plant Parasitic nematodes.
Meeting: BITS 2007 - Year: 2007
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Topic: Novel methodologies, algorithms and tools
89. Bartocci E, Corradini F, Entcheva E, Grosu R, Smolka SA
CellExcite: A tool for simulating in-silico Excitable Cells
Meeting: BITS 2007 - Year: 2007
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Topic: Novel methodologies, algorithms and tools
90. Brilli M, Fani R, Liò P
Identifying Communities structure in paralogous genes
Meeting: BITS 2007 - Year: 2007
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Topic: Structural and functional analysis of genomes
91. Calabrese A, Ammaturo L, Mele F, Talamo O, Tino A, Tortiglione C
From Gene Ontology to Cell Ontology: interoperability among biological knowledge bases
Meeting: BITS 2007 - Year: 2007
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Topic: Novel methodologies, algorithms and tools
92. Calogero RA, Sanges R, Cordero F
oneChannelGUI: A Bioconductor graphical interface for single channel microarrays analysis.
Meeting: BITS 2007 - Year: 2007
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Topic: Novel methodologies, algorithms and tools
93. Catalano D, Grillo G, Perrone G, Stea G, Susca A, Mulè G, Licciulli F
AFLP Manager: a database to manage and analyze AFLP finger-print profiles
Meeting: BITS 2007 - Year: 2007
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Topic: Novel methodologies, algorithms and tools
94. Ceccarelli M, Maratea A
An Alternative Splicing Predictor in C.Elegans Based on Time Series Analysis
Meeting: BITS 2007 - Year: 2007
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Topic: Novel methodologies, algorithms and tools
95. Cereda M, Sironi M, Comi GP, Pozzoli U
Integrating current knowledge to predict mutations effect on splicing.
Meeting: BITS 2007 - Year: 2007
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Topic: Novel methodologies, algorithms and tools
96. D'Elia D
News from EMBnet
Meeting: BITS 2007 - Year: 2007
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Topic: Novel methodologies, algorithms and tools
97. D'Acierno A, Facchiano AM, Mazzeo MF, Siciliano RA
SpectraWEB: A WEB Application for Storing and Retrieving Bacterial MALDI-TOF-MS Spectra
Meeting: BITS 2007 - Year: 2007
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Topic: Novel methodologies, algorithms and tools
98. Fu L-M, Isella C, Corà D, Caselle M, Medico E
Use of an innovative clustering algorithm to summarize the outcome of genome-wide motif searches
Meeting: BITS 2007 - Year: 2007
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Topic: Novel methodologies, algorithms and tools
99. Licciulli F, Grillo G, Turi A, Delle Foglie G, Catalano D
CROSSMiner: a deductive system to discover biological relations
Meeting: BITS 2007 - Year: 2007
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Topic: Novel methodologies, algorithms and tools
100. Maratea A, Ceccarelli M, Baldi P
An Approach to Multifactorial Microarray Data Analysis
Meeting: BITS 2007 - Year: 2007
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Topic: Novel methodologies, algorithms and tools
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